commit after merge

Hg-commit: 8f6399aa161ba7ba59389734d930b52909d403b7

doc fixes, WRMS norms, TSGL_DI schemes

Hg-commit: bbbc495383d0f1841eced6a7dae66527a1153f32

Merge

Hg-commit: a7710b011ce3f2c4ac169ab040d429403a541f7f

Rename TS_EULER, etc like TSEULER.

Update manual with this fix, s/PVode/Sundials/, new DAE subsection.
Remove useless level of indirection in TS_GL.

Hg-commit: f1b6ef10292b83255b81f152535632c2ed1a6

Rename TS_EULER, etc like TSEULER.

Update manual with this fix, s/PVode/Sundials/, new DAE subsection.
Remove useless level of indirection in TS_GL.

Hg-commit: f1b6ef10292b83255b81f152535632c2ed1a6ee6

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Merge

Hg-commit: baa8f2f465d20ab4bba8d4f521887116a3ff362b

merge

Hg-commit: 43186342f1f727a4e381537d1ef7eeed91c275cc

From: kai.germaschewski@unh.edu
Subject: TS_RK enhancements

The attached patch fixes two issues (IMO) with TS_RK:

- the step numbering is slightly messed up: Before the timeloop starts, TSMonitor

From: kai.germaschewski@unh.edu
Subject: TS_RK enhancements

The attached patch fixes two issues (IMO) with TS_RK:

- the step numbering is slightly messed up: Before the timeloop starts, TSMonitor is called with steps=0, then after the first step, it is called again with steps=0, since steps is only incremented later. (Arguably, the step numbering is more messed up than this because failed steps are counted, but TSMonitor is not called. I would actually prefer to use ts->steps to count the number of successful steps, and leave the number of failed steps as an internal diagnostics only (shown in TSView()).

- TS_RK doesn't honor ts->max_steps. Whereas one could argue that setting a number of steps doesn't make too much sense for a timestepper with variable step size, it's actually useful for someone like me, see below.

- As a side effect, this patch also takes care of the warning "Very small steps: 0.0000" that normally happened just as the final time is reached. (In the next-to-last step, the step size would be set to be the difference between final time and current, time, the last step would then update the final time to current time and set the step size to 0, triggering the warning).

Hg-commit: 8f7ce1ea20b09de7ae059611c3dcd618194dc6f3

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Merge

Hg-commit: af487d5b45dae01d0566132d57158d0286d6a750

removed -I$PETSC_DIR from make system and changed the corresponding
#include "src/dsdsdsds" to "../src/sdsdsds" in the source code

Hg-commit: 6e3c4cc4b4bfcb366bae9b71afcb5009c1f0429d

commit aFTERmerge

Hg-commit: 45a698803bd457bdc2ba32be5035e710250a5320

Merge.

Hg-commit: 87e316ba2724836f5390b8c890f9dee19e9c35ea

Commit after a merge

Hg-commit: 27d386e23e9f55709fe4259d452de253e8d187ea

commit after merge

Hg-commit: 6fb2e2031f541698c18b941059a70518bfdac344

Merge

Hg-commit: 1c3afdd77376c2f1a3f6c814cb3554fcc98760b5

initial changes for better memory loggin on objects

Hg-commit: 0ef7914e13d41d173ef1ba2552c26bd9f41bc807

Merge.

Hg-commit: 5b002539f7bb6e94c232479a607bbe05d6885922

Merge


Hg-commit: 88fee7d2fa183025fe76764cedd4a71dffcdf185

moved many implementation headers to include/private

Hg-commit: aa99826eaac01bf46b6b3b0207d0ecd69d3393cb

bk-changeset-1.3349.1.3
kaushik@manu.mcs.anl.gov|ChangeSet|20050620221736|50543
ChangeSet
1.3349.1.3 05/06/20 17:17:36 kaushik@manu.mcs.anl.gov +0 -0
Merge bk://petsc@petsc.bkbits.net/petsc-dev

bk-changeset-1.3349.1.3
kaushik@manu.mcs.anl.gov|ChangeSet|20050620221736|50543
ChangeSet
1.3349.1.3 05/06/20 17:17:36 kaushik@manu.mcs.anl.gov +0 -0
Merge bk://petsc@petsc.bkbits.net/petsc-dev
into manu.mcs.anl.gov:/home/kaushik/petsc


Hg-commit: e28f09e984c4b10dc1c40090e54df9bfb9cd3802

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bk-changeset-1.3351
bsmith@harley.mcs.anl.gov|ChangeSet|20050616185417|41391
ChangeSet
1.3351 05/06/16 13:54:17 bsmith@harley.mcs.anl.gov +1 -0
Merge bk://petsc.bkbits.net/petsc-dev
into harley

bk-changeset-1.3351
bsmith@harley.mcs.anl.gov|ChangeSet|20050616185417|41391
ChangeSet
1.3351 05/06/16 13:54:17 bsmith@harley.mcs.anl.gov +1 -0
Merge bk://petsc.bkbits.net/petsc-dev
into harley.mcs.anl.gov:/sandbox/bsmith/petsc-dev

bmake/common/rules
1.162 05/06/16 13:54:16 bsmith@harley.mcs.anl.gov +0 -2
Auto merged


Hg-commit: 11aa0449394a382a20394ec945c8939ed3e4760a

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bk-changeset-1.3349.2.13
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050613195056|28628
ChangeSet
1.3349.2.13 05/06/13 14:50:56 barrysmith@barrysmith-57.mcs.anl.gov +0 -0
Merge bk://petsc@pe

bk-changeset-1.3349.2.13
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050613195056|28628
ChangeSet
1.3349.2.13 05/06/13 14:50:56 barrysmith@barrysmith-57.mcs.anl.gov +0 -0
Merge bk://petsc@petsc.bkbits.net/petsc-dev
into barrysmith-57.mcs.anl.gov:/Users/barrysmith/petsc-dev


Hg-commit: 4fa599fb19eb520bde267d7f25b69f602f86b993

show more ...

bk-changeset-1.3349.10.1
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050613195022|01979
ChangeSet
1.3349.10.1 05/06/13 14:50:22 barrysmith@barrysmith-57.mcs.anl.gov +8 -0
adic fixes,
ts fi

bk-changeset-1.3349.10.1
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050613195022|01979
ChangeSet
1.3349.10.1 05/06/13 14:50:22 barrysmith@barrysmith-57.mcs.anl.gov +8 -0
adic fixes,
ts fix
docs

src/snes/utils/damgsnes.c
1.68 05/06/13 14:50:18 barrysmith@barrysmith-57.mcs.anl.gov +6 -6
clearer comments with a different symbol for other restriction
operator

src/mat/interface/matrix.c
1.183 05/06/13 14:50:18 barrysmith@barrysmith-57.mcs.anl.gov +6 -4
more details on handling periodic boundary conditions and negative indices

src/mat/impls/adic/nladic.c
1.11 05/06/13 14:50:17 barrysmith@barrysmith-57.mcs.anl.gov +1 -1
typo in FUNCT string

src/ksp/pc/impls/mg/mg.c
1.61 05/06/13 14:50:17 barrysmith@barrysmith-57.mcs.anl.gov +1 -1
don't set smoother count on coarse level?

bmake/adic.init
1.23 05/06/13 14:46:04 barrysmith@barrysmith-57.mcs.anl.gov +1 -1
added PI for adic to ignore

bmake/adicmf.init
1.19 05/06/13 14:45:59 barrysmith@barrysmith-57.mcs.anl.gov +1 -0
added PI for adic to ignore

src/mat/impls/aij/seq/aij.c
1.233 05/06/13 14:42:47 barrysmith@barrysmith-57.mcs.anl.gov +4 -4
use fortran kernels only when sparse row is NOT turned on

src/ts/impls/explicit/rk/rk.c
1.21 05/06/10 19:41:56 barrysmith@barry-smiths-computer.local +24 -26
removed null =0.0 for vecaxpy also use ts->time_step instead of dt
so timestep is accessible by the user.


Hg-commit: 1f11724d0d5d221e082fd1e2b9b5b9bf21cb4996

show more ...

bk-changeset-1.3253
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050505174711|38457
ChangeSet
1.3253 05/05/05 12:47:11 barrysmith@barrysmith-57.mcs.anl.gov +0 -0
Merge bk://petsc@petsc.bkbits

bk-changeset-1.3253
barrysmith@barrysmith-57.mcs.anl.gov|ChangeSet|20050505174711|38457
ChangeSet
1.3253 05/05/05 12:47:11 barrysmith@barrysmith-57.mcs.anl.gov +0 -0
Merge bk://petsc@petsc.bkbits.net/petsc-dev
into barrysmith-57.mcs.anl.gov:/Users/barrysmith/petsc-dev


Hg-commit: 3def4e1b447197beeac35f5604193318d778c8a7

show more ...

bk-changeset-1.3251.1.1
hzhang@triumph.mcs.anl.gov|ChangeSet|20050505153523|05973
ChangeSet
1.3251.1.1 05/05/05 10:35:23 hzhang@triumph.mcs.anl.gov +21 -0
replace pvode -> sundials
upgrade inte

bk-changeset-1.3251.1.1
hzhang@triumph.mcs.anl.gov|ChangeSet|20050505153523|05973
ChangeSet
1.3251.1.1 05/05/05 10:35:23 hzhang@triumph.mcs.anl.gov +21 -0
replace pvode -> sundials
upgrade interface of PVODE to SUNDIALS -- not done yet

src/ts/interface/tsregall.c
1.14 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +3 -3
replace pvode -> sundials

src/ts/interface/tsreg.c
1.25 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/ts/interface/ts.c
1.47 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/ts/impls/implicit/sundials/petscsundials.h
1.13 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +11 -24
replace pvode -> sundials

src/ts/impls/implicit/sundials/petscsundials.c
1.34 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +190 -171
interface to sundials --
is not done yet (gives incorrect solution)

src/ts/impls/implicit/makefile
1.6 05/05/05 10:35:21 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/ts/impls/explicit/rk/rk.c
1.20 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/ts/examples/tests/ex4.c
1.13 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +33 -20
replace pvode -> sundials
remove several memory leaks -- few still exit, will continue work on it

src/ts/examples/tests/ex2.c
1.9 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/ksp/examples/tutorials/ex10.c
1.51 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

src/fortran/custom/zts.c
1.21 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +5 -5
replace pvode -> sundials

src/contrib/sif/2d/sif.F
1.4 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +3 -3
replace pvode -> sundials

src/contrib/sif/1d/sifseq.F
1.4 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +5 -5
replace pvode -> sundials

src/contrib/sif/1d/sif.F
1.4 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +7 -7
replace pvode -> sundials

python/PETSc/utilities/__init__.py
1.9 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

make.py
1.8 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +2 -2
replace pvode -> sundials

include/petscts.h
1.33 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +14 -14
replace pvode -> sundials

include/petscpc.h
1.73 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +1 -1
replace pvode -> sundials

include/finclude/petscts.h
1.10 05/05/05 10:35:20 hzhang@triumph.mcs.anl.gov +10 -11
replace pvode -> sundials

bin/config/acconfig.h
1.7 05/05/05 10:35:19 hzhang@triumph.mcs.anl.gov +2 -2
replace pvode -> sundials

src/ts/impls/implicit/sundials/petscsundials.h
1.12 05/05/02 09:43:43 hzhang@triumph.mcs.anl.gov +0 -0
Rename: src/ts/impls/implicit/sundials/petscpvode.h -> src/ts/impls/implicit/sundials/petscsundials.h

src/ts/impls/implicit/sundials/petscsundials.c
1.33 05/05/02 09:43:18 hzhang@triumph.mcs.anl.gov +0 -0
Rename: src/ts/impls/implicit/sundials/petscpvode.c -> src/ts/impls/implicit/sundials/petscsundials.c

src/ts/impls/implicit/sundials/petscpvode.h
1.11 05/05/02 09:42:40 hzhang@triumph.mcs.anl.gov +6 -6
mvdir

src/ts/impls/implicit/sundials/petscpvode.c
1.32 05/05/02 09:42:40 hzhang@triumph.mcs.anl.gov +227 -227
mvdir

src/ts/impls/implicit/sundials/makefile
1.6 05/05/02 09:42:40 hzhang@triumph.mcs.anl.gov +6 -6
mvdir


Hg-commit: 5b095fd009fe277c895a4b595dfcafe2691bd9f5

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bk-changeset-1.2980
knepley@khan.mcs.anl.gov|ChangeSet|20050316005405|32347
ChangeSet
1.2980 05/03/15 18:54:05 knepley@khan.mcs.anl.gov +32 -0
Merge

src/snes/interface/snes.c
1.75 05/03/15

bk-changeset-1.2980
knepley@khan.mcs.anl.gov|ChangeSet|20050316005405|32347
ChangeSet
1.2980 05/03/15 18:54:05 knepley@khan.mcs.anl.gov +32 -0
Merge

src/snes/interface/snes.c
1.75 05/03/15 18:54:04 knepley@khan.mcs.anl.gov +0 -3
Merge

src/mat/utils/matio.c
1.28 05/03/15 18:54:04 knepley@khan.mcs.anl.gov +0 -1
Merge

src/vec/utils/vecio.c
1.44 05/03/15 18:35:27 knepley@khan.(none) +0 -0
Auto merged

src/vec/impls/seq/bvec2.c
1.66 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/vec/impls/mpi/pdvec.c
1.51 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/vec/examples/tutorials/ex17.c
1.5 05/03/15 18:35:27 knepley@khan.(none) +0 -2
Auto merged

src/ts/interface/ts.c
1.46 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/sys/src/viewer/impls/ascii/filev.c
1.37 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/sys/src/objects/prefix.c
1.11 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/sys/src/objects/pgname.c
1.10 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/sys/src/error/err.c
1.51 05/03/15 18:35:27 knepley@khan.(none) +0 -3
Auto merged

src/mat/impls/sbaij/seq/sbaij.c
1.141 05/03/15 18:35:27 knepley@khan.(none) +0 -1
Auto merged

src/mat/impls/dense/seq/dense.c
1.78 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/mat/impls/bdiag/seq/bdiag3.c
1.27 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/mat/impls/aij/seq/matlab/aijmatlab.c
1.43 05/03/15 18:35:26 knepley@khan.(none) +0 -0
Auto merged

src/mat/impls/aij/seq/aijfact.c
1.114 05/03/15 18:35:26 knepley@khan.(none) +0 -0
Auto merged

src/mat/impls/aij/seq/aij.c
1.223 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/mat/impls/adj/mpi/mpiadj.c
1.48 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/interface/precon.c
1.62 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/impls/redundant/redundant.c
1.25 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/impls/mg/mgfunc.c
1.24 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/impls/mg/mg.c
1.59 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/impls/ksp/pcksp.c
1.24 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/pc/impls/jacobi/jacobi.c
1.18 05/03/15 18:35:26 knepley@khan.(none) +0 -0
Auto merged

src/ksp/pc/impls/composite/composite.c
1.30 05/03/15 18:35:26 knepley@khan.(none) +0 -2
Auto merged

src/ksp/pc/impls/bjacobi/bjacobi.c
1.40 05/03/15 18:35:26 knepley@khan.(none) +0 -3
Auto merged

src/ksp/pc/impls/asm/asm.c
1.46 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/ksp/ksp/interface/itcl.c
1.17 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

src/dm/da/src/gr2.c
1.32.1.1 05/03/15 18:35:26 knepley@khan.(none) +0 -2
Auto merged

include/petscts.h
1.32 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

include/petscpc.h
1.72 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged

include/petscksp.h
1.64 05/03/15 18:35:26 knepley@khan.(none) +0 -1
Auto merged


Hg-commit: c41894b0cb6422519adcfc7fea08b1e4231ff575

show more ...