Postpone stack allocation to setup stage of tstrajectory, -tstrajectory_max_cps works now

add in-memory checkpointing, and it works :)

correct more names for TSTrajectory and add TS to the argument list when creating TSTrajectory

fix violations of PETSc style guide: Usage of SETERRQ and NULL

Clearly warn the user of implicit TS methods that they must set all the diagonal entries of the matrices they provide

Reported-by: Torquil Macdonald Sørensen <torquil@gmail.com>

Note in the manual pages for TSSetIJacobian and TSSetRHSJacobian that the values in the user provided matrices are changed by the TS solvers so one cannot assume they containg the previous set values

Note in the manual pages for TSSetIJacobian and TSSetRHSJacobian that the values in the user provided matrices are changed by the TS solvers so one cannot assume they containg the previous set values.

Reported-by: Torquil Macdonald Sørensen <torquil@gmail.com>

show more ...

Merge branch 'master' into barry/always-mark-floats

Needed to merge in master to resolve conflicts that will appear when this branch is merged with master

TSMonitorLGSolution() manual page had incorrect information about arguments

Reported-by: Torquil Macdonald Sørensen <torquil@gmail.com>

Improved the manual pages with cross links for many of the TS

TSMonitorLGSolution() manual page had incorrect information about arguments

Reported-by: Torquil Macdonald Sørensen <torquil@gmail.com>

Improved the manual pages with cross links for many of the TSMonitorLGXXXX manual pages

show more ...

Merge branch 'master' into stefano_zampini/feature-pcbddc-saddlepoint

Conflicts:
src/ksp/pc/impls/bddc/bddcprivate.c

update manual pages for context set and get routines regarding use from Fortran and defining interface for them

Merge branch 'master' of bitbucket.org:petsc/petsc

Merge branch 'maint'

Merged in dalcinl/fix-tssetfromoptions (pull request #374)

TS: Remove call to SNESSetFromOptions() in subtypes

Merged in dalcinl/fix-lg-monitors (pull request #373)

LG monitors

TS: Remove call to SNESSetFromOptions() in subtypes

Merge branch 'master' into tisaac/dmforest

Get 3.6.2 patches

* master: (1360 commits)
remove nasty memory leak with CUDA code when using block Jacobi with multiple blocks per process
print abs

Merge branch 'master' into tisaac/dmforest

Get 3.6.2 patches

* master: (1360 commits)
remove nasty memory leak with CUDA code when using block Jacobi with multiple blocks per process
print abs in Fortran test example in order to have same result with real and complex builds
changed outdate mpirun and -np to mpiexec and -n
force sqrt to be taken in the precision of PetscReal in fortran examples
continuation line too soon for some compilers
stop configure if user selected C++ clanguage, single precision, complex combination since we do not support it
fixes for Fortran examples to compile cleanly in single precision that do not involve complex numbers
fixes to Fortran examples to compile cleanly in single precision complex
fix previous mistake
must cast 1. to PetscScalar before dividing by a PetscScalar (C++ complex class is terrible)
must cast 0.0 to PetscScalar before comparison with a PetscScalar
changed order of suggested locations of downloadable PETSc to Barry's preference
Increase patchlevel to 3.6.2
remove debug print statement from two commits before
remove debug print statements I accidently left in the last commit
PetscDraw: Fix dummy definition of PetscDrawCollective{Begin|End}()
remove cleanupMumps flag from MatDestroy_Mumps() it should always free the memory it allocated Bug detected while adding features to libMesh
improved viewing of fractional counts in xml nested log viewing fixed bug in output of doubles to xml nested log files
chombo: build only libs - not examples
fix typo. 'gcc-4.8 --with-cxx-dialect=C++11' gives a warning with this line - even though its in a #ifdef thats never enabled.
...

show more ...

LG monitors: Fix TS SNES/KSP interation monitors

To refactor the comments to follow petsc style.

Merge remote-tracking branch 'petsc/master' into fixed-comment-space

Conflicts:
include/petsc/finclude/petscmat.h
src/mat/examples/tests/makefile

To refactor the comments to follow petsc style.

Merge remote-tracking branch 'petsc/master' into fixed-comment-space

Conflicts:
include/petsc/finclude/petscmat.h
src/mat/examples/tests/makefile
src/mat/impls/aij/mpi/mpiov.c

show more ...

To add a space to all comments I have made before. Barry pointed out
that a comment without a space right after '/*' may cause bfort to crash

Merge remote-tracking branch 'petsc/master' into fixed-c

To add a space to all comments I have made before. Barry pointed out
that a comment without a space right after '/*' may cause bfort to crash

Merge remote-tracking branch 'petsc/master' into fixed-comment-space

Conflicts:
include/petsc/finclude/petscmat.h
include/petscmat.h
src/mat/examples/tests/makefile
src/mat/impls/aij/mpi/mpiaij.h

show more ...

Merge branch 'hongzh/ts-adjoint-monitor'

Merge branch 'pr329/master/Fande-Kong/matpartitioning-hierarch' into pr361/master/Fande-Kong/pcgasm-increaseoverlap: need hierarch to build GASM subdomains.

Conflicts:
src/mat/examples/tests/makefi

Merge branch 'pr329/master/Fande-Kong/matpartitioning-hierarch' into pr361/master/Fande-Kong/pcgasm-increaseoverlap: need hierarch to build GASM subdomains.

Conflicts:
src/mat/examples/tests/makefile
src/mat/impls/aij/mpi/mpiaij.h

show more ...

minor change in the comment

add -ts_adjoint_monitor to print information at each adjoint timestep

Merge branch 'master' into knepley/feature-label-empty-stratum

* master: (151 commits)
moved PCTELESCOPE comment into users manual since no one will see the comment
message in makefile about hyp

Merge branch 'master' into knepley/feature-label-empty-stratum

* master: (151 commits)
moved PCTELESCOPE comment into users manual since no one will see the comment
message in makefile about hypre bugs causing test crashes
remove use of some unitialized variables, remove use of "dummy" entries in Vec and IS since Dave May thought they could not be of size zero. Now three telescope tests give no valgrind errors
code sent unitialized data via MPI and allocated too large space for creating indices
Force generateetags.py to use /usr/local/bin/ctags before using ctags because the ctags provided with Apple XCode gets confused by function usage in .tex files and does not make proper tags for TSSolve() and many many others
Optimized version of snes/examples/tutorials/ex1f.F produced incorrect results when lx_v() and lf_v() were declared as of dimension 1 with optimzed builds only. Cannot explain exactly why this happens but since we are using VecGetArray() from Fortran we are gambling with the compiler regardless
make the PetscRandom object used in GAMG to be a public object that can be controlled via the options database. This allows the same example to produce the same results with real and complex numbers by using the option -pc_gamg_random_no_imaginary_part
added parallel tester for examples. Crude but it reduces a basic alltests on my laptop from 25 minutes to 7 1/2 minutes.
remove unneccessary if
fix the problem for ex9 which involves multiple TSSolve calls
shortened the time of several test examples
decrease dramatically the time used by several test examples that take more than a minute on may machine with debug mode
Some of the vectors created in MatNullSpaceCreateRigidBody() were not normalized to 1
fix strange PCTelescope struct name of P which caused duplicate symbol error on some systems cleanup use of PetscMalloc and PetscFree for telescope for modern PETSc standards replace semiredundat to telescope in makefile that runs test examples
SNESUpdateCheckJacobian: make relative norm output syntactically correct
DMCompositeGetGlobalISs: document Fortran interface
fix warnings on bsd. Also fix usage of PetscFunctionBegin/Return
Making an even bigger mess, I cannot explain why this is not in the branch
hypre: update with "Bug fix for Parasails; src/ksp/ksp/examples/tutorials/ex10.c runex10_16"
decrease duration of ex22 by factor of 10 to decrease testing time
...

show more ...

Merge branch 'hongzh/ts-sa-parallel'