Merge branch 'adams/landau-field-major-mat-ordering' into 'main'

added field major matrix permutation to Landau, moved mass matrix creation into main setup method

See merge request petsc/petsc!4821

added field major matrix permutation to Landau, moved mass matrix creation into main setup method

Merge branch 'adams/landau-ex2-dynamic-memory' into 'main'

cleaning up Landau with dynamic allocations

See merge request petsc/petsc!4633

cleaning up Landau with dynamic allocations

Merge branch 'adams/landau-ex2-testset' into 'main'

made test set (cpu. kokkos, cuda 'device', for ex2

See merge request petsc/petsc!4573

made test set (cpu. kokkos, cuda 'device', for ex2 [kokkos fails]

Merge branch 'adams/landau-cuda-opt' into 'main'

Landau optimizations + GPU assembly bug fix

See merge request petsc/petsc!4358

added batching of multiple TSSolve per process for efficiency in applications for processing multiple configuration space vertices simultaneously

add hook for CPU cusparse solves

modified timers

Merge branch 'adams/landau-multiple-grids' into 'main'

adding support for multiple grids with multiple species per grid

See merge request petsc/petsc!4292

adding support for multiple grids with multiple species per grid

Merge branch 'jose/spelling-errors' into 'main'

Fix many spelling errors in manpages and comments

See merge request petsc/petsc!4283

Fix spelling errors in manpages and comments

Merge branch 'adams/landau-relativistic' into 'main'

added relativistic terms to 3D Landau

See merge request petsc/petsc!4250

added relativistic terms to 3D Landau

Merge branch 'jolivet/fix-some-missing-chkerr' into 'main'

Some missing CHKERR[Q|MPI]

See merge request petsc/petsc!4190

Some missing CHKERR[Q|MPI]

Merge branch 'adams/landau-mass-opt' into 'main'

Optimizations for mass term in Landau

See merge request petsc/petsc!4035

Optimizations for mass term in Landau

Merge branch 'barry/2020-11-11/cleanup-matsetvaluesdevice' into 'main'

MatSetValuesDevice: Cleanup and simplify code, including example

See merge request petsc/petsc!3411

MatSetValuesDevice: Cleanup and simplify code, including example

User reported crash of example code. Kernel was passed an ierr that lived in CPU memory

MatSetValuesDevice: do not include private h

MatSetValuesDevice: Cleanup and simplify code, including example

User reported crash of example code. Kernel was passed an ierr that lived in CPU memory

MatSetValuesDevice: do not include private headers from public headers

Feature: MatSetValuesDevice determines automatically from the context (where it is included from) if it is being used from C, CUDA, or Kokkos, PETSC_DEVICE_FUNC_DEC no longer needs to be set before including petscaijdevice.h

Feature: MatSetValuesDevice() now ignores all values outside the global column range.

PetscSplitCSRDataStructure is now a pointer, not a struct, like most PETSc objects, please leave it that way.

Fix all uses of CTABLE that were related to the original MatSetValuesDevice()

Have atomicAdd use Kokkos atomic-add with CPU build when building with Kokkos.

Cuda should now work with --download-openmpi, this is done by updating updateCompilers() to rerun portions of packages/cuda.py after the compilers are reset to use MPI wrappers. This is needed because the resetting of the compilers removes all the compiler flags and packages/cuda.py sets certain values into these flags that was previously lost.

Add MPICXX_INCLUDES, MPICXX_LIBS to fix compile targets for Kokkos examples

'make check' now runs properly for Kokkos test of src/snes/ex3k, fixed bug in the makefile wrt MPI_IS_MPIUNI check

Testing makefile rules: add ex*cu binaries to clean rule

Reported-by: Sam Fagbemi <samkorede24@gmail.com>
Thanks-to: Stefano Zampini <stefano.zampini@gmail.com>
Thanks-to: Mark Adams <mfadams@lbl.gov>

/spend 16h

show more ...

Merge branch 'stefanozampini/update-checkbadsource' into 'main'

Update badsource rules

See merge request petsc/petsc!4064

Update badsource rules

- Zero or more spaces are not allowed for more returning types
- zero spaces not allowed for for|if|while

Merge branch 'adams/landau-gpu-opt' into 'main'

Adams/landau gpu opt

See merge request petsc/petsc!3792