Merge branch 'stefano_zampini/pcbddc_deluxe'

Conflicts:
src/ksp/pc/impls/bddc/bddc.c

Merge branch 'master' into knepley/fix-configure-petsc-dep

* master: (210 commits)
error out on special cases where DMLocalToGlobal_DA won't work
remove unneed uses of local DM vectors and DMLoc

Merge branch 'master' into knepley/fix-configure-petsc-dep

* master: (210 commits)
error out on special cases where DMLocalToGlobal_DA won't work
remove unneed uses of local DM vectors and DMLocalToGlobalBegin/End in examples removed to prevent cut and paste repeats of their use
openmpi: update to version 1.8.3
added more movies and pubs
more movies
MatGetDiagonalBlock() can be called before matrix is assembled
added a couple more movies/images
PetscLogEventGetId() was missing public prototype
simply output from make streams benchmark test
c2html: fixup so that C2HTML make variable is set [similar to cmake.py]
chaco: current blas test does'nt work with Cray CC [which automatically links with blas] and linux - where -lm needs to be listed explicitly. Switch the test to check if we are using PETSc modifled chaco
builddist: always install c2html/sowing
argonne logo for users manual cover
Remove PETSC_HAVE_CUSP_SMOOTHED_AGGREGATION, use PETSC_HAVE_CUSP instead.
mpich: use older tarball with cygwin/gnu compilers
updated information about packages PETSc can use in users manual
Updated users manual to latest ANL Report format requirements
mpich: update to mpich-3.1.3.tar.gz - remove -download-mpich-mpe [mpich no longer packages mpe] - remove -download-mpich-shared. It was added as a split from --with-mpi-shared to --known-mpi-shared and --download-mpich-shared in 50237a55163f90ac7341b723c6422dfa1dbce792 removing this gives back the control of shared=0/1 to package.py - remove download_solaris as the new tarball works with both gcov and on solaris - remove MPICHInstall() [and use GNUPackage.Install()] as the new tarball fixes 'make clean' requiring sudo
added more images and PETSc pubs
Doc: More refs
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Merge branch 'barry/fix-dmlocaltoglobal_da'

remove unneed uses of local DM vectors and DMLocalToGlobalBegin/End in examples
removed to prevent cut and paste repeats of their use

Merge branch 'knepley/fix-l2g-checks'

* knepley/fix-l2g-checks:
IS: Fixed checks for l2g

IS: Fixed checks for l2g

Merge branch 'barry/fix-islocaltoglobalmappingcreateis-with-blocksize'

Merge branch 'barry/fix-islocaltoglobalmappingcreateis-with-blocksize' into maint

fix for ISLocalToGlobalCreateIS() for bs > 0. Code copied a size for each index when it should be for each block index
this happended because the documentation for ISLocalToGlobalCreate() was wrong s

fix for ISLocalToGlobalCreateIS() for bs > 0. Code copied a size for each index when it should be for each block index
this happended because the documentation for ISLocalToGlobalCreate() was wrong since it said the size was number of indices, not number of block indices

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Merge branch 'barry/fix-islocaltoglobalmappingcreateis-with-blocksize'

Merge branch 'barry/fix-islocaltoglobalmappingcreateis-with-blocksize' into maint

fix ISLocalToGlobalMappingCreateIS() to respect the block size of the IS
Added test case for it

Reported-by: Glenn Hammond <gehammo@sandia.gov>

ISLocalToGlobalMapping: added ISGlobalToLocalMappingApplyIS

Merged upstream/master to feature-dmmoab

Merge remote-tracking branch 'upstream/master'

Merge branch 'jed/dmda-memusage'

allocated one more space than needed in indices array

fixed ISLocalToGlobalMappingGetInfo() to handle block and non-block cases

added ISGlobalToLocalMappingApplyBlock() and fixed the ISGlobalToLocalMappingApply() to work for points
added simple test for these

Lisandro gave me this so it must be good

ISLocalToGlobalMappingGetSize() now returns total size, not size associated with blocks
added some Fortran and Fortran 90 interfaces for ISLocalToGlobalMapping

remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix bl

remove DMDAGetGlobalIndices() since handled by DMGetLocalToGlobalMapping() followed by ISLocalToGlobalMappingGetIndices()
fixed cases where bs of ISLocalToGlobalMapping in Mat did not match matrix block size

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Merge branch 'master' into prbrune/snes-fascontinuation

* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]

Merge branch 'master' into prbrune/snes-fascontinuation

* master: (855 commits)
fix for moab example had wrong blocksize of mapping
docs:remove src/docs/doxygen/manual [per Barry's instructions]
gfortran: remove 132 char limit from f90 free-form
SNES: Set up matrix-free *after* copying the user Jacobian to snes->pc
DMPlex-Gmsh: Use trueNumCells when building the coordinate section
Sys: Got guard logic reversed
Sys: The #define guard for PetscMalloc*() must match the one for PetscFree*()
PetscFV: I hate fucking complex
removed ltog scatter from DMDA since functionality can be obtained with gtol scatter and less memory
fix test of DMLocalToGlobalBegin/End and add actual test cases
improve object memory logging for DA, ISLocalToGlobal and ISBLOCK
lower high water mark of constructing parallel scatter by allocating only as much room in svalues as needed
owner in VecScatter construction is the rank, therefor can use PetscMPIInt to hold it do not PetscInt
another reuse of allocated array in 2d/3d DMDA create
improved high water mark of DMDASetups by implementing and using PETSC_USE_POINTER for ISCreateBlock()
PetscFV: Another complex fix
DMPlex+TS: Fixing types
ISIdentity() was wrong for block IS! Indices are NOT scaled by bs
PetscFV: Straighten out complex types
TS ex11: Fix casts and remove unused variable
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Merge branch 'master' into barry/saws-options

Merge branch 'jed/dmda-memusage'